=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= DENDROCHRONOLOGY PROGRAM LIBRARY Update number 118 15 JUN 1998 =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= SOME NEW FEATURES OF THE PROGRAMS * [This README.TXT file is updated when a new version of one or more programs or routines becomes available. It describes new features in the programs, with the most recent changes first.] =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= DISCLAIMER (See below) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= * If you find problems or have suggestions about any of the programs, please contact: Richard Holmes, c/o Laboratory of Tree-Ring Research, University of Arizona, Tucson, Arizona 85721 USA E-mail: RHolmes@LTRR.Arizona.EDU * If you have detected a problem, it is possible that it has already been found and the corrected version has been made available. Make sure you have the latest versions of the programs; see ANONYMOUS FTP below. =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= * In Programs ARSTAN, CRONOL and DPL/CRN, if a time series is to be divided by a detrending curve, it is subtracted instead if the time series goes negative or the detrending curve goes to zero or negative. The mean of the resulting indices will be 1.0 [09JUN98] * A couple of screen savers have been added: SCRSAV. Try them. [01JUN98] * Program ARSTAN uses the Compact format by default, and saves files with the number of radii (__ARS.NRA) and the number of trees (__ARS.NTR). [29MAY98] * A new format for data, known as "New compact", is now available in Programs DPL, FMT, COFECHA and SCRPLT. It will eventually be available in all programs in this group. The advantage of this format is the preservation of precision even when extremely large values are found in the same data set. [20MAY98] * Now available is a new version of COF10K, a high-capacity COFECHA. It will work with time spans of up to 10240 years in length and 8000 series. The program will run slowly with a very large data set. [19MAY98] * Program FMT (Manipulate data or change format) is now an independent program, as well as being in DPL. [13MAY98] * Program PCA (Principal Components Analysis) is now an independent program, as well as being in DPL. [13MAY98] * Program YUX (Makes casewise file for spreadsheet) is now an independent program, as well as being in DPL. [13MAY98] * Program DPL/PCA (Principal Components Analysis) now handles very long series correctly. [17APR98] * Program ARSTAN no longer adjusts the mean of the chronology to unity. Eigenvalues and Eigenvectors are saved in a file with the extension __.EV; and Principal component amplitude series are saved in a file with extension __.PC [16APR98] * Program DPL/SUR (survey of data files) now orders correctly by any selected item. [27MAR98] * In Program DPL/YUX (data series in columns for spreadsheets) precision has been improved; there are up to double or more the number of significant digits. This means that large and small values are given with maximum precision. This is an important improvement. [23MAR98] * Program DPL/MET provides better documentation in the output file. [19MAR98] * Program EDRM and routine DPL/EDT had a problem with series identifications; this has been remedied. [16MAR98] * Programs were simplified and recompiled. [04MAR98] * Program ARSTAN tree summaries are truncated if required to include only continuous time spans; they do not include voids between non-continuous radial series. [29JAN98] * DPL.FMT now allows you to fit a spline curve of rigidity proportional to the length of the series. For example, a rigidity of "-67" will fit a spline of 50% frequency response of 67% of the series length. You may also save both spline and indices in a single run. [01DEC97] * The date computation in all programs was corrected so that there will be no problem when the year 2000 arrives. Version was set to 3.00 in most programs. [14JUL97] * The algorithm in Programs ARSTAN, CRONOL and DPL/CRN for computing the negative exponential curve fit was extensively modified and dramatically improved by Ed Cook of the Tree Ring Laboratory at Lamont-Doherty Earth Observatory. The new routine is now included in all versions of the programs. The negative exponential curve fit may go negative, that is, the curve may have a negative asymptote. The user may override this provision and revert to linear regression fit. This is in Option 2, "Detrending Method", when curve fit type "1" is selected. When the series of measurements is divided by the curve, however, a constant is added to raise both series to all positive values, the division is performed, and the constant is subtracted again. Program ARSTAN checks for indices over 4.0 and lists them by series; this is one tool you may use to find problems in the curve fit. [02FEB98], [03JUN97] * You may now set your favorite default colors for text and screen. You may have one color combination during execution of programs and another when you are outside them. Use either DPL and type (~), or use program SETCLR. If the file ANSI.SYS is not activated in your CONFIG.SYS file, use SETCLR and respond with a slash (/). All programs were recompiled today. [24OCT96] * Program EVENT (Superposed Epoch Analysis) now will handle a maximum window size of 102 years -- those before plus those after plus key year. [11SEP96] * Mean sensitivity is now calculated even for series that contain negative values, according to the formula: MS = SUM(I=2,N)/(N-1) 2. * |(Y(I) - Y(I-1))| / ( |Y(I)| + |Y(I-1)| ) if ( |Y(I)| + |Y(I-1)| ) is non-zero Where MS is mean sensitivity of the series Y is the time series of values N is the number of values in the series With the caveat: If there are any negative values in a series, the decimal point for mean sensitivity is printed as an asterisk. In such cases mean sensitivity cannot strictly be calculated correctly. [24APR96] * In opening files two new convenient features are added. The program spells out the format it finds for the data file; you may correct it if it is incorrect. After seeing the first eight lines of the data file, you may now close the file with a backslash (\) and open another file as desired. Data series in Compact format may be interspersed among those in ITRDB Measurement or Index format, if the first series is not in Compact format. =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= DISCLAIMER > The following disclaimer applies to the Dendrochronology Program Library, Program ARSTAN, all programs in the Dendroecology Program Library, and any other software distributed by myself directly, via Anonymous FTP, or by any other means. > All software has received only limited testing and neither the author(s), the Laboratory of Tree-Ring Research, nor the University of Arizona can accept responsibility for its compatibility with other computer systems or user needs. The user must judge its efficacy for the intended use. > Although every effort is made to ensure that the software functions properly, no guarantee is made to this effect and we cannot be responsible for any problems with it, including adaptation of the software to any particular computer system. > The software is made available free of charge. Any payment accepted is for actual costs of diskettes, copying, printing and/or postage. =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= ANONYMOUS FTP The Dendrochronology Program Library and programs in the Dendroecology Program Library are in the ANONYMOUS FTP directory /SYS/HOME/ANONYMOU/PUB/DPL They are not compressed, but alive and well and ready to work. Each time you unload programs, be sure to use the most updated version of the memory manager program DOSXMSF.EXE. Instructions below show how to obtain the programs. =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= HOW TO GET PROGRAMS VIA ANONYMOUS FTP Following are instructions to obtain the latest versions of computer programs available from the Tree-Ring Laboratory of the University of Arizona. First is a table of computer prompts, your responses and an explanation. After the table is a more complete record of a typical FTP session. TRANSFERRING EXECUTABLE FILES TO YOUR PC Be sure to set your FTP client to binary mode to transfer executable files to your PC. Put executable files in a subdirectory listed in the PATH statement in the AUTOEXEC.BAT file. You may then run any program simply by typing the name, e.g.: "DPL" or "EVENT" -------------------- ------------------------- --------------------------- Prompt_by_computer Your_input Explanation -------------------- ------------------------- --------------------------- $> [Your computer] ftp kati.ltrr.arizona.edu Connect to server KATI.LTRR.ARIZONA.EDU> login anonymous Anonymous login Password: rholmes@ltrr.arizona.edu Your E-mail address KATI.LTRR.ARIZONA.EDU> binary Set to BINARY transfer KATI.LTRR.ARIZONA.EDU> cd pub Change to PUBLIC directory KATI.LTRR.ARIZONA.EDU> cd dpl Change to DPL directory KATI.LTRR.ARIZONA.EDU> mget dosxmsf.exe Get Memory manager * KATI.LTRR.ARIZONA.EDU> mget dpl.exe Get Program Library KATI.LTRR.ARIZONA.EDU> mget arstan.exe Get Program ARSTAN KATI.LTRR.ARIZONA.EDU> mget [any other programs] Get other programs KATI.LTRR.ARIZONA.EDU> bye Exit connection to server FTP> exit [may vary by system] Exit FTP * This is a new version of the memory manager, required for any version of Programs DPL, ARSTAN and others dated after 24 May 1994. =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Following is a nearly complete record of a typical FTP session. A blank line comes before a line where you respond, and the remaining lines are printed on the screen by the computer. Your response follows the symbol ">" or in the case of the password, ":". -------------------------------------------------------------------------------- $> ftp kati.ltrr.arizona.edu KATI.LTRR.ARIZONA.EDU>login anonymous binary Type: Image, Structure: File, Mode: Stream KATI.LTRR.ARIZONA.EDU>cd pub cd dpl mget dosxmsf.exe mget dpl.exe mget arstan.exe bye exit =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=